Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015895635.1_cds_XP_016447727.1_42460
CDS Infomation

[gene=LOC107772765] [db_xref=GeneID:107772765] [protein=sorting nexin-4-like] [protein_id=XP_016447727.1] [location=complement(join(34155..34400,35241..35459,35685..35927,36012..36176,36912..37675,37824..37932,38099..38185,38387..38485,38757..38867,39625..39864))] [gbkey=CDS]
Sequence

ATGAACCTCTACGGTAATTACTCATTTCTGGACTTGGGATTTAATGATCCCACTTTCATC
GAATCCCTTTCGCTTTCTCGCACTTCGTCGATCGTCGACGACGAGGAATTACAACCGGCG
AGGATTTCTTCATTGCTTGACAAAGCTAGCAAAAGTCTAAGGAGTCCACCTAAGCATCGG
CACGACGGCACCTCGCCGCTTCCGTTAGGAATGGATTGGAGTCCTCCCCCTCGTGTTTGG
GATGGACATGATACCATTTGGCCACATGATTCTCAAACAGGATGGAGTTACTGTGCCACT
ATTCCTTCTTGGACTGTCTTGTCACGCCCCAGAGGTTCGGCTGCTGTAGTGTTGTACAGG
GTTCAAATTGGTATACAATCACCTGATGGGTTCACAACCACGCGAGAGATACTACGACGA
TTTAGTGATTTCTTAAAGCTATTGTCAGAGCTGAAGAAAGAATTCCCAAAGAAAAAGTTG
CCCCCCGCTCCTTCAAAGGGGCTTCTGAGAATGCAAAGCAATGCGCTTTTGGAAGAACGT
AGGTGTTTATTGGAGGATTGGATGACGAAAGTATTGTCTGACATCGAGTTATCAAGAAGT
GCTCACATAGGGATCTTTCTTGAGCTTGAAGCAGCTGCAAGGTCATCATTCTATGAGTTG
AATCAGAACGTTGCAGATGTGAATTCATCCATCAGCGTAGTTCCATCGATCCAATTCTCA
AATAGTTCAGATGTTTCTTTGCTTGCTGGTCAATCATCATTTGCTTCTGATTGCGGCAAT
GATTCTGCTTATGGGACCCCTGAGCTGGGATCACCAACAGAGGGCATGAGCAGGTTTCGC
GAACTTGACAACGCAGCATTTTACCAGGGTTTCACCCCTTCAGTTGAAGCAATTTCTGAA
GTTGTACATAGTGATAGCAAGCCAGCAAAAGATTCTGAACAAGGGAACCAGGTGAATCGT
TCAAAAATGCCTTATACAGGAGATAGCAGTGACGTTTCCACCAAGAGAATCATAGATAAT
GCTCAAGTCGTATGCAAGGATGAGATGGAGCTTTTCTCTGGTAGAGAAAATCTTACAGCT
TTTGGCCATGATAAACAGACTCCTGAAACTGACATTTCTTCAGAAAGAATCTCTGACATT
TCAAATTTCCTGAAGCTTGAAGCATTGAGAAATACCTCATATGACTCGGCTGAAGGTTCT
GAACTCTTAGAAGGACTAAATGCACCGGCAAGCTCCGACTTACAGTTCCCGGGCCGCTTA
AAAGTTGTTATTCAATTGGAAGAACAAACTAAAATGAATAGGATTCTTAGTGCTATGCAA
CTGAGGCTGGCCACAGCAAAAAATGACATGGAAGATCTCCTGATGAGACTGAATCAAGAG
CATGCTGTAAGACAGTATCTTGCCACGAAGGTTAAAGATTTGGAAATTGAGCTTGAATCT
CTCAAACAGAGTGGCAAAGAGAACCTGCAACAAGCAATTCAAATGGAGAGGGAAAAATTT
ACTCACATGCTATGGGATATGGAGGAACTTAGAAGAAAATGTGTGGAGATGGAATTGAAC
CTGACGTCTGAACAGGCTGACAAGGTTCAAATGGAATCAACTCAAAGAATCACAATACAA
GAGAATGAAAGACTGTACGAAGAGTTGAGTGCTGCTCAACAGCAGATCAATAGCTTGCGG
AAACACCATTTGGAGTCAGATTCAAAGTCCAAAGCAGATGTCAAACTTTTAATCAAGGAG
ATTAAATCTCTAAGAACTTCCCAGACAGAACAGAAGCAAGAGCTCTGCAAATTGGCAAAA
GAGAAGGCAGAAGTAGAAAGGATTCTAAAGGAGGAAAGGCAAATTAGGGAACGTGCTAAT
GCTGCAAATATTAAGCTGCTGCATGAGTGTGAAATTGTTCGCAATAGACTTGAGGAATGC
AGCGTCAGTTTCCTCATCGAGGAAGAAAATAAACTGGTCCTGGAGGCATCTAGCCCTTCT
GATGCCATTGATATACTGTCAACATCTGATAATCGAATAGGTCTACTTCTTGCTGAGGCC
CAGCTGCTTGCAGAAGATGTTGAAACTACTGTTGCTAGTAGAAATCTTGATGGAGGTTAT
TCAAGGACAGCAGTGGATGAAATGAGGAAACAGCTAGCTGATGTTTACGTTGACAATGCC
AAATTGAGGAAACAGATGAACTCTGTCATTCGTTATGCACTCCAAACAGCTAATAGATTG
AAGGACAATGAAGAAGAAAGCGCTCCAACAAAGACGGCTCTTACGAAGTTTTTAGAGGGA
TAA

Peptide Sequence

PEP ID

XP_016447727.1
PEP Infomation

PREDICTED: sorting nexin-4-like [Nicotiana tabacum]
Sequence

MNLYGNYSFLDLGFNDPTFIESLSLSRTSSIVDDEELQPARISSLLDKASKSLRSPPKHR
HDGTSPLPLGMDWSPPPRVWDGHDTIWPHDSQTGWSYCATIPSWTVLSRPRGSAAVVLYR
VQIGIQSPDGFTTTREILRRFSDFLKLLSELKKEFPKKKLPPAPSKGLLRMQSNALLEER
RCLLEDWMTKVLSDIELSRSAHIGIFLELEAAARSSFYELNQNVADVNSSISVVPSIQFS
NSSDVSLLAGQSSFASDCGNDSAYGTPELGSPTEGMSRFRELDNAAFYQGFTPSVEAISE
VVHSDSKPAKDSEQGNQVNRSKMPYTGDSSDVSTKRIIDNAQVVCKDEMELFSGRENLTA
FGHDKQTPETDISSERISDISNFLKLEALRNTSYDSAEGSELLEGLNAPASSDLQFPGRL
KVVIQLEEQTKMNRILSAMQLRLATAKNDMEDLLMRLNQEHAVRQYLATKVKDLEIELES
LKQSGKENLQQAIQMEREKFTHMLWDMEELRRKCVEMELNLTSEQADKVQMESTQRITIQ
ENERLYEELSAAQQQINSLRKHHLESDSKSKADVKLLIKEIKSLRTSQTEQKQELCKLAK
EKAEVERILKEERQIRERANAANIKLLHECEIVRNRLEECSVSFLIEEENKLVLEASSPS
DAIDILSTSDNRIGLLLAEAQLLAEDVETTVASRNLDGGYSRTAVDEMRKQLADVYVDNA
KLRKQMNSVIRYALQTANRLKDNEEESAPTKTALTKFLEG

Transcript Sequence

Gene sequence data has not been registered.